Fondazione per la Ricerca Farmacologica Gianni Benzi Onlus has an articulate organizational structure that allows the effective management of all activities. It provides for: the funding members Assembly, the Board of Directors, the Supervisory Body, the President, the Scientific Office of Presidency, the Scientific Committee, the Research Department and the Management and Administrative Department.

It indicates the management policy of the Foundation, approving its objectives and programs. It establishes the general lines of the activities on an annual basis, approves the annual budget, appoints the members of the Scientific Committee, the President and the Secretary. It decides also on all acts for the administration of the Foundation's assets and the management of revenues.

Composed of eminent experts in the field appointed by the Board of Directors and coordinated by the Responsible of the Research Department, the Scientific Committee advices on relevant scientific topics and collaborates with the Board of Directors in defining the Foundation’s programmes and activities.

It is divided into three units: Administration, Research Management and Secretariat. It takes care of implementing the administrative activity according to the President's address, taking care of relations with external suppliers, keeping the minutes of the statutory bodies, managing the collections and payments, prepares project reports and personnel costs. Furthermore, it guarantees general secretarial activities and provides for the organization of events and courses.